2009
- Appanaboyina S, Mut F, Löhner R, Putman CM,
Cebral JR, Simulation of intracranial aneurysm stenting: techniques and
challenges”, CMAME 2009 (in press)
- Bauer-Mehren A, Furlong LI, Rautschka M,
Sanz F. Pathway databases and tools for their exploitation: benefits, current
limitations and challenges. BMC Bioinformatics, 10(Suppl 8):S6, 2009.
- Bauer-Mehren A, Furlong LI, Sanz F.
Comprehensive view of pathways related to complex diseases and their cross-talks.
17th ISMB, 8th ECCB, Stockholm, Sweden, June 27-July 2, 2009.
- Bauer-Mehren A, Furlong LI, Sanz F. From
SNPs to Pathways: Integration of functional effect of sequence variations on
models of cell Signalling pathways. Mol Syst Biol, 5:290, 2009.
- Bauer-Mehren A, Furlong LI, Sanz F. From
SNPs to Pathways: Integration of functional effect of sequence variations on
models of cell signalling pathways. 10th BioPathways meeting, ISMB/ECCB 2009,
Stockholm, Sweden, June 27-28, 2009.
- Beard, D. A. and Britten, R and Cooling, M. T and Garny,
A. and Halstead, M. D. B and Hunter, P. and
Lawson, J. and Lloyd, C.M. and
Marsh, J. and Miller, A, D. P. Nickerson, P. M. F Nielsen,
T. Nomura, S. Subramanium and S. M. Wimalaratne and Yu. T. CellML
metadata: Standards, tools and repositories, Philosophical Transactions of the
Royal Society A 367(1895)1845-1867, 2009.
- Bogunovic H, J.M. Pozo, M.C. Villa-Uriol,
C.B.L.M. Majoie, R. van den Berg, J. Macho, J. Blasco, L. Sanroman, A.F.
Frangi. Evaluation of Automatic Vessel Segmentation based on Geodesic Active
Regions in 3DRA and MRA. Submitted to Investigative Radiology. Under revision.
2009
- Bowker and P. N. Watton and P. Summers and
J. Byrne and Y. Ventikos. Rest versus Exercise Haemodynamics for Middle
Cerebral Artery Aneurysms: A Computational Study, AJNR, 2009 (in press).
- Bowker and P. N. Watton and P. Summers and
J. Byrne and Y. Ventikos. Rest versus
Exercise Haemodynamics for Middle Cerebral Artery Aneurysms: A Computational
Study, AJNR, 2009 (in press).
- Castro MA, Putman CM, Sheridan M, Cebral
JR. Hemodynamic patterns of anterior communicating artery aneurysms: a possible
association with rupture, AJNR PMID: 19131411, Jan 8, 2009.
- Castro, M. A.; Putman, C. M.; Sheridan, M.
J., et al. Hemodynamic Patterns of Anterior Communicating Artery Aneurysms: A
Possible Association with Rupture AJNR 30 (2) 297-302 February, 2009
- Castro, MA; Putman, CM;
Sheridan, MJ, et al. Hemodynamic Patterns of Anterior
Communicating Artery Aneurysms: A Possible Association with Rupture AMERICAN
JOURNAL OF NEURORADIOLOGY Volume: 30 Issue: 2
Pages: 297-302 Published: 2009
- Cebral JR, Mut F, Appanaboyiona S, Löhner
R, Miranda C, Scrivano E, Lylyk P, Putman CM, Image-based analysis of blood
flow modification in stented aneurysms, Proc. SPIE Medical Imaging, Paper No.
7262-51, Orlando FL, Feb 7-11, 2009.
- Cebral JR, Mut F, Putman CM, Alley M,
Bammer R, Calamante F, Computational fluid dynamics and phase-contrast magnetic
resonance of normal cerebral arteries, Proc. SPIE Medical Imaging, Paper No.
7262-75, Orlando FL, Feb 7-11, 2009.
- Cebral JR, Putman CM, Alley M, Hope T,
Bammer R, Calamante F, Hemodynamics in Normal Cerebral arteries: qualitative
comparison of 4D phase-contrast magnetic resonance and image-based
computational fluid dynamics, J. Eng. Math, Special Issue on Mathematical
Modeling in Health and Medicine, 2009 (in press).
- Cebral, JR; Hendrickson, S; Putman, CM
Hemodynamics in a lethal basilar artery aneurysm just before its rupture
AMERICAN JOURNAL OF NEURORADIOLOGY, 30 (1) 95-98, 2009.
- Cebral, JR; Putman, CM; Alley, MT, et al.
Hemodynamics in normal cerebral arteries: qualitative comparison of 4D
phase-contrast magnetic resonance and image-based computational fluid dynamics
JOURNAL OF ENGINEERING MATHEMATICS Volume: 64 Issue: 4 Pages: 367-378
Published: 2009.
- Chatziprodromoua, I and D. Poulikakosa and
Y. Ventikos 2007 On the influence of variation in haemodynamic conditions on
the generation and growth of cerebral aneurysms and atherogenesis: A
computational model, Journal of
Biomechanics, 40:3626–3640, 2009.
- Christie and P. M. F. Nielsen and S.
Blackett and C. Bradley and P. J. Hunter. FieldML: Standards, tools and
repositories. Phil. Trans. Roy. Soc. A 367,
1869-1884, 2009.
- Cooling, M.T. and P. J. Hunter and E. J. Crampin. Physiome
Mark-up Languages for Systems Biology: Model Modularization and Reuse, Chapter
13 in Systems Biomedicine: Methods and Applications Liu, E. T., Lauffenburger,
D. A. (Eds.), Academic Press, 2009.
- De Craene, M., Camara, O., Bijnens, B. H.
& Frangi, A. F. 2009 Non-stationary diffeomorphic registration: application
to endovascular treatment monitoring. In Medical imaging 2009: Image processing
(eds J. P. W. Pluim & B. M. Dawant), vol. 7259, p. 72591F. SPIE, 2009
- De Craene, M., Pozo, J. M., Villa-Uriol, M.
C., Vivas, E., Sola, T., Guimaraens, L., Blasco, J., Macho, J. & Frangi, A.
F. 2008 Coil compaction and aneurysm growth: image-based quantification using
non-rigid registration. In Medical imaging 2008: Computer-aided diagnosis (eds
M. Giger & N. Karssemeijer), vol. 6915, p. 69151R. SPIE, 2009.
- Flore E, I.
Larrabide, L. Petrini, G. Pennati, A. F. Frangi. Stent
deployment in aneurysmatic cerebral vessels: Assessment and quantification of
the differences between Fast Virtual Stenting and Finite Element Analysis, In
"Cardiovascular Interventional Imaging and Biophysical Modelling"
Workshop, Medical Imaging, Computing and Computer-Assisted Intervention
(MICCAI'09), London, United Kingdom, September 2009.
- Flore E, I.
Larrabide, L. Petrini, G. Pennati, A. F. Frangi. Fast
virtual stenting in cerebral aneurysms: validation with finite element
analysis, In "IV International Conference in Computationla Bioengineering
(ICCB2009)", 16-18 September 2009.
- Fornes, Oriol and Aragues, Ramon and Espadaler,
Jordi and Marti-Renom, Marc A and Sali, Andrej and Oliva, Baldo ModLink+:
improving fold recognition by using protein-protein interactions in
Bioinformatics 25, 2009.
- Fox, J.
Vivek Patkar, Ioannis Chronakis, Richard Bigent. From practice
guidelines to clinical decision support: closing the loop Journal of Royal
Society of Medicine, J R Soc Med 2009;102:464-473, 2009.
- Frangi, A. Aubry, R. Cebral, J. Fast
numerical solutions in patient-specific simulations od arterial models in
International Journal for Numerical
Methods in Biomedical Enginnering 26 (73)85, 2009
- Friedrich Christoph M., Ebeling Christian,
Klinger Roman, Bauer-Mehren Anna, Pastor Manuel, Cruz Villa Maria, Pozo Jose
M., Frangi Alejandro F., Risselada Roelof, Hofmann-Apitius Martin Workflows for
Data Mining in Integrated multi-modal Data on Intracranial Aneurysms using
KNIME useR Conference 8-10 July, Rennes, France 2009
- Friedrich Christoph M., Gündel Michaela
Combining Text Mining and Microarray Analysis SMILE useR Conference 8-10 July,
Rennes, France 2009
- Friedrich Christoph M., Klinger Roman
rSMILE, an interface to the Bayesian Network package GeNIe/SMILE useR
Conference 8-10 July, Rennes, France 2009
- Furlong LI and Sanz F. Identification of
sequence variants of genes from biomedical literature: the OSIRIS approach. In:
Violaine Prince and Mathieu Roche (eds.) Information Retrieval in Biomedicine:
Natural Language Processing for Knowledge Integration. IGI Global, 2009
- Furlong LI. Challenges in the integration
of genomic and phenotypic information on models of cell signaling pathways. Departamento de Química Inorgánica, Facultad de
Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina. December
3, 2009
- Katsuhito Yasuno, Kaya
Bilguvar, Philip Bijlenga, Amanda Low Siew Kee, Boris Krischek, Georg Auburger,
Matthias Simon, Dietmar Krex, Zulfikar Arlier, Nikhil Nayak, Ynte M Ruigrok,
Mika Niemela, Atsushi Tajima, Mikael von und zu Fraunberg, Doczi Tamas,
Florentina Wirjatijasa, Akira Hata, Blasco Jordi, Agi Oszvald, Hidetoshi
Kasuya, Zilani Gulam, Beate Schoch, Singh Pankaj, Carsten Stüer, Risselada
Roelof, Jürgen Beck, Teresa Sola, Filomena Ricciardi, Arpo Aromaa, Thomas
Illig, Stefan Schreiber, Cornelia M van Duijn, Leonard H van den Berg, Perret
Claire, Proust Carole, Constantin Roder, Ali K. Ozturk, Emilia Gaal, Wickins
Jeremy, Daniela Berg, Christof Geisen, Friedrich Christoph, Summers Paul,
Frangi Alex, Matthew W State, H Erich Wichmann, Monique M B Breteler, Cisca
Wijmenga, Shrikant Mane, Leena Peltonen, Elio Vivas, Sturkenboom Miriam,
Lawford Patricia, Byrne James, Macho Juan, I. Erol Sandalcioglu, Bernhard
Meyer, Andreas Raabe, Rüfenacht Daniel, Juha E Jääskeläinen, Juha Hernesniemi,
Gabriel J E Rinkel, Hitoshi Zembutsu, Ituro Inoue, Aarno Palotie, Francois
Cambien, Yusuke Nakamura, Richard P Lifton, Murat Gunel. Genome-wide association study of intracranial aneurysms identifies 5
risk loci, 2009. (accepted for publication by Nature Genetics).
- Geers AJ, I. Larrabide, A. G. Radaelli, H.
Bogunovic, H.A.F. Gratama van Andel, C. B.Majoie, A. F. Frangi. Reproducibility of
image-based computational hemodynamics in intracranial aneurysms: comparison of CTA and 3DRA. IEEE
International Symposium on Biomedical Imaging (ISBI2009). 28th June - 1st July
2009, Boston, Massachusetts, USA, 2009
- Gwilliam MN, Hoggard N, Capener D, Singh P,
Marzo A, Verma PK, Wilkinson ID. MR derived volumetric flow rate waveforms at
locations within the common carotid, internal carotid, and basilar arteries. J
Cereb Blood Flow Metab (Nature Publishing Group). Dec;29(12):1975-82, 2009.
- H. Ho and K. Mithraratne and H. Schmid and
G. Sands and P. J. Hunter. Computer
simulation of vertebral artery occlusion in endovascular procedures. IJCARS,
2009.
- H. Ho and K. Mithraratne and K. O’Brien and
G. Sands and G. Mallinson and P. J. Hunter. A multidimensional approach to
haemodynamics modelling of patient-specific arterial structures. Computer
Methods in Biomechanics and Biomedical Engineering, 2009.
- H. Schmid and P. N. Watton and M. M. Maurer
and J. Wimmer and P. Winkler and Y. C. Wang and O. Roehrle and M. Itskov.
Impact of transmural heterogeneities on arterial growth and remodelling in the
formation of aneurysms, Biomechanics and
Modelling in Mechanobiology, 2009.
- Hose DR, Howard B, Marzo A, Singh PK, Lawford
P. Haemodynamic Characterization of Aneurysms by Computational Fluid Dynamics.
Published in 2nd Proceedings of ESMINT Society, 2009.
- Kim M, I. Larrabide, M-C Villa-Uriol, A. F.
Frangi. Hemodynamic Alterations Of A Patient- Specific Intracranial Aneurysm Induced By
Virtual Deployment Of Stents In Various Axial Orientations. IEEE International
Symposium on Biomedical Imaging (ISBI2009). 28th June - 1st July 2009, Boston,
Massachusetts, USA, 2009
- Kohler, M.; Benkner, S. A Service Oriented
Approach for Distributed Data Mediation on the Grid in Eighth International
Conference on Grid and Cooperative Computing, 2009.
- Kroon, M. and G.A. Holzapfel: Elastic
properties of anisotropic vascular membranes examined by inverse analysis.
Computer Methods in Applied Mechanics and Engineering, 2009 (in press).
- Kroon, M; Holzapfel, GA. Elastic properties
of anisotropic vascular membranes examined by inverse analysis Minisymposium on
Models and Methods in Computational Vascular and Cardiovascular Mechanics held
at the 9th US National Congress on Computational Mechanics, JUL 22-26, 2007 San
Francisco in COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING 198 (45-46)
3622-3632, 2009.
- Lawford
and Y. Ventikos and A. Khir and
M. Atherton and D. Evans and D. R. Hose and C. M. Care and P. N. Watton and I.
Halliday and D. C. Walker and A. P. Hollis and M. W. Collins 2008 The Use of Modelling to Aid Understanding of
the Interactions of Blood Flow and the Artery Wall: Current Status and Future
Prospects, Biomedicine and Pharmacotherapy,
60(8):530-535, 2009.
- Larrabide I, M. Kim, L.
Augsburger, M. C. Villa-Uriol, D.Rüfenacht, A. F. Frangi. Fast virtual deployment of self-expandable stents: method and
in-vitro validation for intracranial aneurysmal stenting. Submitted to Medical
Image Analysis. Under revision. 2009
- Liu, B; Clapworthy, GJ; Dong, F Fast
Isosurface Rendering on a GPU by Cell Rasterization COMPUTER GRAPHICS FORUM
28(8) 2151-2164, 2009.
- Marzo A, Singh PK, Lawford P, Patel UJ,
Coley SC Hose DR. A novel approach for computational haemodynamic
characterisation of cerebral aneurysms. Published in the Proceedings of VI
International Conference on Computational Bioengineering, Bertinoro, Italy, p
65, 2009.
- Marzo, A; Singh, P; Reymond, P, et al.
Influence of inlet boundary conditions on the local haemodynamics of
intracranial aneurysms COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL
ENGINEERING 12(4) 431-444 , 2009.
- Mellebeek B, Rodríguez-Penagos C, Furlong
LI. Uima In The Biocuration Workflow: A Coherent Framework For Cooperation
Between Biologists And Computational Linguists. 3rd International Biocuration
Conference, Berlin, Germany, April 16-19, 2009.
- Mitsos, A.P and Kakalis N. M. P. and Ventikos, Y and
Byrne, J 2008 Haemodynamic simulation of aneurysm coiling
in an anatomically accurate computational fluid dynamics model: technical note,
Neuroradiology, 50:341–347, 2009.
- Mut F, Aubry R, Löhner R, Cebral JR Fast numerical solutions of patient-specific
blood flows in 3D arterial systems Int. J. Numer. Meth. Biomed. Engng. 2010;
26:73–85, 2009.
- Mut F, Wright S, Putman CM, Ascoli G,
Cebral JR. IImage-based modeling of hemodynamics in cerebral arterial trees,
Proc. SPIE Medical Imaging, Paper No. 7262-17, Orlando FL, Feb 7-11, 2009.
- Mut,F. Aubry,R. Löhner,R. Cebral, JR. Fast
numercial solutions of patient-specific blood flows in 3D arterial systems
International Journal for Numerical
Methods in Biomedical Enginnering 26 p.73-85, 2009
- Oubel E, J. R.Cebral, M. De Craene, R.
Blanc, J. Blasco, J. Macho, C.M. Putman, A.F. Frangi. Wall motion estimation in
intracranial aneurysms. Submitted to Physiological Measurements. Under
revision. 2009
- Pankaj K Singh A. Marzo
et al. Assessment of clinicians’ views, their
experience and performance on the use of computational fluid dynamics for the
extraction of non-observable hemodynamic data in order to improve the
management of unruptured intracranial aneurysms: A preliminary report on the
first exposure of computational fluid dynamics to the clinical community.
Submitted to JNS, Nov., 2009.
- Pitt A, Marzo A, Singh P, Larrabide I,
Aguilar M, Lawford P, Coley SC, Frangi A, Patel UJ, Hose, DR. Haemodynamics in
intracranial aneurysms of the anterior and posterior circulation and its
association with rupture. Abstract accepted for publication in Br J Neurosurg,
2009.
- Pozo JM, M. C.Villa-Uriol, A.F. Frangi.
Fast algorithm for 3D Geometric and Zernike moments computation from
unstructured surface meshes. Submitted to IEEE Transactions on Pattern Analysis
and Machine Intelligence. Under revision. 2009
- Risselada R, Friedrich CM, Ebeling C,
Klinger R, Bauer-Mehren A, Workflows for Data Mining in Integrated multi-modal
Data of Intracranial Aneurysms using KNIME, Talk presented at the useR!
conference, Rennes, France, July 8-10, 2009.
- Risselada R, Friedrich CM, Ebeling C,
Klinger R, Bauer-Mehren A, Workflows for Data Mining in Integrated multi-modal
Data of Intracranial Aneurysms using KNIME, Talk presented at the useR!
conference, Rennes, France, July 8-10, 2009.
- Risselada, R. Straatman, H, van Kooten, F,
Dippel, DWJ, van der LugtA , Niessen, WJ
FirouzianA Herings, RMC, Sturkenboom, MCJM Platelet aggregation inhibitors,
vitamin K antagonists, and risk of subarachnoid haemorrhage Antithrombotics and
risk of SAH, 2009.
- Roduit, N, Meyer, R. Bijlnega,
P.Geissbuhler, A.Image Depersonalization: a new efficient approach Abstract
Submission, 2009.
- Sanz F, Lopez L, Bauer-Mehren A, Selent J,
Furlong LI, Pastor M. Integrative approaches in pharmainformatics. VII Europena
Workshop in Drug Design, Siena, Italy, May 24-30, 2009.
- Schaap, M., Metz, C., van Walsum, T., van
der Giessen, A., Weustink, A., Mollet, N., Bauer, C., Bogunovic, H., Castro, C.
et al. Standardized evaluation methodology and reference database for
evaluating coronary artery centerline extraction algorithms. Med. Image Anal.,
13, 701-714. 2009
- Sanz F, Lopez L, Bauer-Mehren A, Selent J,
Furlong LI, Pastor M. Integrative approaches in pharmainformatics. VII Europena
Workshop in Drug Design, Siena, Italy, May 24-30, 2009.
- Sforza D, Putman CM, Cebral JR.
Hemodynamics of Cerebral Aneurysms, Ann. Review of Fluid Mechanics, 41: 91-107,
2009.
- Singh PK, Marzo A, Coley SC, Lawford P,
Frangi A, Hose DR, Patel UJ. The @neurist Project: Development of a
Computational Model to Improve Management of Intracranial Aneurysms. Published
in the Proceedings of XIV-AANS-WFNS (American Association of Neurological
Surgeons-World Federation of Neurosurgical Societies), World Congress, Boston,
MA, USA, 30th Aug – 4th Sep 2009, 1512-1520.
- Singh PK, Marzo A, Coley SC, Lawford P,
Frangi A, Hose DR, Patel UJ. Computational Simulation of Hemodynamic
Characteristics in Intracranial Aneurysms with @neufuse. Published in the
Proceedings of XIV-AANS-WFNS (American Association of Neurological
Surgeons-World Federation of Neurosurgical Societies), World Congress, Boston,
MA, USA, 30th Aug – 4th Sep 2009, 2505.
- Singh PK, Marzo A, Kumar K, Tahir H,
Weeratunge TF, Lycett R, Boutarbouch M, Lawford P, Frangi A, Hose DR, Coley SC,
Patel UJ. Effects of heparin on the hemodynamics of intracranial aneurysms,
2009 (accepted by J Neuroradiol for publication).
- Singh PK, Marzo A, Lawford P, , Frangi A,
Patel UJ, Hose, DR, Coley SC. Effects of smoking and hypertension on the wall
shear stress and oscillatory shear index at the site of intracranial aneurysm
formation. Published as an abstract in the Proceedings of 9th International
Conference on Cerebrovascular Surgery, Nagoya, Japan, 08;2, 2009.
- Singh PK, Marzo A, Lawford P, Frangi A,
Patel UJ, Hose, DR, Coley SC. Effects of smoking and hypertension on the wall
shear stress and oscillatory shear index at the site of intracranial aneurysm
formation, 2009 (in press: Clinical Neurol Neurosurg).
- Singh PK, Marzo A, Staicu C, Gwilliam MN,
Lawford P, Wilkinson I, Frangi A, Patel UJ, Hose, DR, Coley SC. The effects of
aortic coarctation on cerebral hemodynamics and its importance in the
etiopathogenesis of intracranial aneurysms. J Vascular and Interventional
Neurology 2(3):1-14, 2009.
- Singh PK, Marzo A, Tahir H, Weeratunge TF,
Coley SC, Lawford P, Patel UJ, Hose, DR. Analysis of different hemodynamic
factors during initiation and rupture of intracranial aneurysms and influence
of various drugs on their natural history. Accepted for publication in the
Proceedings of XIV-AANS-WFNS (American Association of Neurological
Surgeons-World Federation of Neurosurgical Societies), World Congress, Boston,
MA, USA, 30th Aug – 4th Sep 2009.
- Singh PK, Marzo A, Tahir H, Weeratunge TF,
Hose DR, Lawford P, Patel UJ, Coley SC. Computational study of the effects of
drugs on growth and rupture of intracranial aneurysms: Published in the
Proceedings of VI International Conference on Computational Bioengineering,
Bertinoro, Italy, p 67, 2009.
- Singh PK, Pitt A, Chiarini A, Marzo A,
Lawford P, Coley SC, Rufenacht DA, Frangi A, Patel UJ, Hose, DR. Cerebral
Aneurysms: from Carotid Ligations to Computational Fluid Dynamics: Published in
2nd Proceedings of ESMINT Society, 2009.
- Ventikos Y Holland EC. Bowker TJ Watton PN. Kakalis NMP Megahed,
M. Zhu, F. Summers, P. Byrne, J.
Computational modellling for cerebral aneurysm: Risk evaluation and
interventional planning, British Journal of Neuroradiology, 2009 (in press).
- Ventikos, Y and T. Bowker and P. N. Watton
and N. M. P Kakalis and J. Byrne. Risk evaluation and interventional planning
for cerebral aneurysms: Computational models for growth, coiling and
thrombosis, International Journal of
Computational Fluid Dynamics, Vol. 23(8): 595-607, 2009.
- Ventikos, Y. and E. C. Holland and T. J. Bowker and P. N.
Watton and N. M. P. Kakalis and M.
Megahed and F. Zhu and P. E. Summers and J. V. Byrne. Computational modellling for cerebral
aneurysm: Risk evaluation and interventional planning, British Journal of
Neuroradiology, 2009 (in press).
- Villa-Uriol MC, I. Larrabide, J. M. Pozo,
M. Kim, O. Camara, M. De Craene, C. Zhang, A. Geers, H. Morales, H. Bogunovic,
R. Cardenes and A. F. Frangi. Toward integrated management of cerebral
aneurysms. Submitted to Philosophical Transactions of the Royal Society A.
Under revision. 2009
- Watton and N. A. Hill. Evolving mechanical
properties of a model of abdominal aortic aneurysm, Biomechanics and Modelling
in Mechanobiology, 8(1):25-42, 2009.
- Watton and Y. Ventikos. Modelling Evolution
of Saccular Cerebral Aneurysms, Journal of Strain Analysis, 44(5):375-389, 2009.
- Watton and Y. Ventikos and G. A. Holzapfel.
Modelling the Mechanical Reponse of Elastin for Arterial Tissue, Journal of
Biomechanics, 42:1320-1325, 2009.
- Watton, PN. and A. Semilovic and N. B.
Raberger and P. Huang and G. A. Holzapfel and Y. Ventikos. Haemodynamics and Growth during
Daughter Bleb Formation of Cerebral Aneurysms, Biomechanics and Modelling in
Mechanobiology, 2009.
- Watton, PN. and Y. Ventikos and G. A.
Holzapfel. Modelling the growth and
stabilisation of cerebral aneurysms,
Mathematical Medicine and Biology,
26(2):133-164, 2009.
- Watton, PN; Ventikos, Y; Holzapfel, GA
Modelling the mechanical response of elastin for arterial tissue JOURNAL OF
BIOMECHANICS Volume: 42 Issue: 9 Pages: 1320-1325 Published: 2009.
- Watton, P.
Raberger, N.B. Holzapfel, GA. Ventikos, Y. Coupling the
Haemodynamic Environment to the Evolution of Cerebral Aneurysms: Computational
Framework and Numerical Examples, ASME J Biomech Eng, Vol. 131(10), 2009.
- Wimalaratne and M. D. B. Halstead and C. M.
Lloyd and M. T. Cooling and E. J. Crampin and P. F. Nielsen. A method for visualizing CellML
models, Bioinformatics, 25(22) 3012-3019, 2009.
- Wohrer , A. Lustig T. Brezany, P. Scalable
Relational Query Results Handling in Service Oriented Architectures
International Workshop on High Performance Distributed Data Management held at
the 4th International Conference for Internet Technology and Secured
Transactions, 823- 829, 2009
- Zhang, C., Villa-Uriol, M. C., De Craene,
M., Pozo, J. M. & Frangi, A. F. Morphodynamic analysis of cerebral aneurysm
pulsation from time-resolved rotational angiography. IEEE Trans. Med. Imag.,
28(7): 1105-1116, 2009.
- Zhang C, M. De Craene, M.C. Villa-Uriol,
J.M. Pozo, B.H. Bijnens, A.F. Frangi. Estimating continuous 4D wall motion of
cerebral aneurysms from 3D rotational angiography. In Med. Imag. Comp. Comp.-
Assist. Interv. MICCAI (ed. G.-Z. Y. et al.), vol. 5761 of Lecture Notes on
Computer Science, pp. 140-147. 2009
2008
-
-
Balocco S, Camara O, Bijnens BH, Frangi AF. Patient-specific image-based estimation of regional mechanical properties in cerebral aneurysms. IEEE Trans Med Imag, 2008 (submitted)
-
Balocco S, Cámara O, Frangi AF. Towards Regional Elastography of Intracranial Aneurysms. MICCAI 2008, Proceeding (Lecture Notes In Computer Science, 5242, pp 131-138), 2008
-
-
Bludszuweit-Philipp C, Buske M, Kuehne S. Numerical prediction of thrombus formation and growth in medical devices. ESAO-2008, European Society for Artificial Organs: Annual Meeting, Geneva, Switzerland, 3rd-6th September 2008
-
Bludszuweit-Philipp C, Geltmeier A, Buske M. Virtual stenting for customisation of endovascular devices. ESAO-2008, European Society for Artificial Organs: Annual Meeting, Geneva, Switzerland, 3rd-6th September 2008
-
Bowker T, Summers P, Byrne J, Watton PN, Ventikos Y. Rest versus Exercise Haemodynamics for Middle Cerebral Artery Aneurysms: A Computational Study. American Journal Of Neuroradiology, 2008 (submitted)
-
-
Dunlop R, Arbona T, Rajasekaran H, Lo Iacono L, Fingberg J, Summers P, Benkner S, Engelbrecht S, Chiarini A, Friedrich C, Moore B, Bijlenga P, Iavindrasana J, Hose RD, Frangi AF. @neurIST - Chronic Disease Management through Integration of Heterogeneous Data and Computer-interpretable Guideline-Services. Proceedings of the HealthGrid 2008, IOS Press, 173-177, ISBN 978-1-58603-874-8, 2008
-
Elger B, Iavindrasana J, Lo Iacono L, Müller H, Roduit N., Summers P, Wright J. Health Data Depersonalisation for Prospective Research in the Life Sciences. Computer Methods, Programs in Biomedicine journal, 2008 (submitted)
-
Friedrich CM, Dach H, Gattermayer T, Engelbrecht G, Benkner S, Hofmann-Apitius M. @neuLink: A Service-oriented Application for Biomedical Knowledge Discovery. Proceedings of the HealthGrid 2008, IOS Press, 165-172, ISBN 978-1-58603-874-8, 2008
-
Friedrich CM, Dunlop R, Chronakis Y, Sturkenboom MCJM, Oliva B, Sanz F, Hofmann-Apitius M. Initial Results on Knowledge Discovery, Decision Support for Intracranial Aneurysms. Special Session on Knowledge Discovery and Decision Support in European Projects at HEALTHINF 2008, Funchal, Madeira, Portugal, January 28-31st , 2008
-
-
-
Gruschka N, Lo Iacono L, Rajasekaran H. Security Architecture for Federated Medical Information Systems. Phil. Trans. A Journal, 2008 (submitted)
-
Hanser S, Fluck J, Furlong LI, Friedrich CM, Hofmann-Apitius M, Stenzhorn H, Boeker M. Knowledge Structuring and Retrieval for Intracranial Aneurysm Research. Proceedings of the HealthGrid 2008 and Special issue of the Philosophical Transactions of the Royal Society A Mathematical, Physical and Engineering Sciences on the VPH, 2008
-
Harvey M, De Fabritiis G, Giupponi G. Accuracy of the Lattice Boltzmann method on the Cell processor. Phys. Rev. E, 2008
-
Hofmann-Apitius M, Fluck J, Furlong L, Fornes O, Kolarik C, Hanser S, Boeker M, Schulz S, Sanz F, Klinger R, Mevissen T, Gattermayer T, Oliva B, Friedrich CM. Knowledge environments representing molecular entities for the virtual physiological human. Philosophical Transactions of the Royal Society A Mathematical, Physical and Engineering Sciences, Vol. 366, Nº 1878, September 13th, 2008
-
Iavindrasana J, Lo Iacono L, Müller H, Periz I, Summers P, Wright J, Friedrich CM, Dach H, Gattermayer T, Engelbrecht G, Benkner S, Hofmann-Apitius M, Dunlop R, Arbona A, Rajasekaran H, Fingberg J, Chiarini A, Moore B, Bijlenga P, Hose R, Frangi AF. The @neurIST project. Proceedings of the HealthGrid 2008, IOS Press, 161-164, ISBN 978-1-58603-874-8, 2008
-
Kumpf K, Woehrer A, Benkner S, Engelbrecht G, Fingberg J. A semantic mediation architecture for a clinical Data Grid. Grid Computing for Bioinformatics and Computational Biology, Wiley & Sons series on bioinformatics, in press, published Online: 30 January 2008
-
Larrabide I, Radaelli A, Frangi AF. Fast virtual stenting with deformable meshes: application to intracranial aneurysms. MICCAI 2008, session 9th of September, 2008
-
Lawford P, Ventikos Y, Khir A, Atherton M, Evans D, Hose DR, Care CM, Watton PN, Halliday I, Walker DC, Hollis AP, Collins MW. Modelling the interaction of haemodynamics and the artery wall: Current status and future prospects. Biomedicine & Pharmacotherapy International congress of Pisa, Volume 62, Issue 8, Pages 530-535, October 2008
-
Lo Iacono L, Rajasekaran H. Security Architecture for Distributed Medical Information Systems. SWSOA workshop, München, Germany, 8-13th of September 2008
-
Raberger NB, Ventikos Y, Watton PN. Modelling the Influence of Haemodynamics on the Growth of Cerebral Aneurysms. Journal of Biomechanics, Vol. 41, S329, July 2008
-
Radaelli AG, Augsburger L, Cebral JR, Ohta M, Ruefenacht DA, Balossino R, Benndorf G, Hose DR, Marzo A, Metcalfe R, Mortier P, Mut F, Reymond P, Socci L, Verhegghe B, Frangi AF. Reproducibility of haemodynamical simulations in subject-specific stented aneurysm models: A Report on the Virtual Intracranial Stenting Challenge 2007. Journal of Biomechanics , Volume 41, Issue 10, Pages 2069-2081, 19 July 2008
-
Rajasekaran H, Iacono LL, Hasselmeyer P, Fingberg J, Summers P, Benkner S, Engelbrecht G, Arbona A, Chiarini A, Friedrich CM, Hofmann-Apitius M, Kumpf K, Moore B, Bijlenga P, Iavindrasana J, Mueller H, Hose DR, Dunlop R, Frangi AF. @neurIST–Towards a System Architecture for Advanced Disease Managment through Integration of Heterogeneous Data, Computing, and Complex Processing Services. Proceedings IEEE International Symposium on Computer-Based Medical Systems (CBMS), Jyväskylä, Finland, IEEE Computer Society Press, June 2008
-
Sforza D, Putman CM, Oubel E, DeCraene M, Frangi AF, Cebral JR. Cerebral aneurysm hemodynamcis and local wall injury: computational modeling and clinical observations. Poster, 5th International Bio-Fluid Symposium, Workshop, Caltech, Pasadena, California, March 27-30, 2008
-
Sforza D, Putman CM, Oubel E, DeCraene M, Frangi AF, Cebral JR. Characterization of cerebral aneurysm wall motion from dynamic angiography. (poster) Proc. American Society of Neuroradiology (ASNR) 46th Annual Meeting, New Orleans, Louisiana, May 31-June 5, 2008.
-
Schmid H, Watton PN, McCormick M, Lanir Y, Ho H, Hunter P, Ehret A, Itskov M. Computational modeling of cerebral aneurysm formation: Framework for modeling the interaction between fluid dynamics, signal transduction pathways and arterial wall mechanics. 4th European Medical and Biological Engineering Conference EMBEC'08, FCCC Antwerp, 23rd-27th of November 2008
-
Ventikos Y, Bowker T, Kakalis N, Watton PN. Risk evaluation and interventional planning for cerebral aneurysms: Computational models for growth, coiling and thrombosis. International Journal of Computational Fluid Dynamics, 2008 (submitted)
-
Ventikos Y, Bowker T, Watton PN, Kakalis N. Growth, Thrombosis and coiling for cerebral aneurysms: Can multiphysics models evolve to clinically applicable tools?. Fifth International Bio-Fluid Symposium and Workshop, Caltech, Pasadena, California, USA, March 28th-30th 2008
-
Watton PN. Modelling of wall function and thrombosis. 7th Advanced Aneurysm Treatment Symposium, University of Oxford, UK, December 2008
-
Watton PN, Raberger NB, Ventikos Y. Computational model can predict aneurysm growth. SPIE Newsroom, DOI: 10.1117/2.1200801.0999, 2008
-
Watton PN, Raberger NB, Ventikos Y. Modelling Evolution of Saccular Cerebral Aneurysms. Journal of Strain Analysis, 2008 (submitted)
-
Watton PN, Raeberger NB, Ventikos Y. Modelling Growth and Daughter Bleb Formation of Cerebral Aneurysms. Journal of Biomechanics, Vol. 41, S298, 2008
-
Watton PN, Raberger NB, Ventikos Y. Modelling the Influence of Haemodynamics on the Growth of Cerebral Aneurysms. ASME Journal of Biomechanical Engineering: special issue on growth and remodelling in native and engineering tissues, 2008 (submitted)
-
Watton PN, Ventikos P, Holzapfel GA. Modelling Growth and Stabilisation of Cerebral Aneurysms. Mathematical Medicine and Biology, recently accepted
-
Watton PN, Ventikos Y, Holzapfel GA. Modelling the mechanical response of elastin for arterial tissue. Journal of Biomechanics, recently accepted
2007
-
Arbona A, Benkner S, Engelbrecht G, Fingberg J, Hofmann-Apitius M, Kumpf K, Lonsdale G, Woehrer A. A Service-Oriented Grid Infrastructure for Biomedical Data and Compute Service. IEEE Transactions on NanoBioscience. Volume 6, Issue 2, Page(s): 136-141, June 2007
-
Bernsdorf J, Wang D. A Tool-Chain for Blood Flow Simulation in Cerebral Aneurysms. 4th IntraCranial Stent Meeting ICS-2007, Kyoto, Japan, April 18th-20th 2007
-
Bernsdorf J, Wang D. Blood Flow Simulation in Cerebral Aneurysm: A Lattice Boltzmann Application in Medical Physics. PARCFD 2007 International Conference on Parallel Computational Fluid Dynamics, Antalya, Turkey, May 21-24th 2007
-
Bijlenga P. @neurIST - Integrated Biomedical Informatics for the Management of Cerebral Aneurysms: a progress report on a European initiative within the 6th Framework Programme Priority 2 of the Information Society Technologies (IST). Congress of Neurological Surgeons, San Diego, California, USA, 15-20th of September 2007
-
Bijlenga P. @neurIST - Integrated Biomedical Informatics for the Management of Cerebral Aneurysms: a progress report. 13th European Congress of Neurosurgery EANS, Glasgow, United Kingdom, 2–7th September 2007
-
-
-
Cebral JR, Radaelli AG, Frangi AF, Putman CM. Hemodynamics before and after bleb formation in cerebral aneurysms. Conference Proceedings Paper, SPIE Medical Imaging 2007: Physiology, function and structure from medical images, Vol. 6511, San Diego, USA 17-22th February 2007
-
Cebral JR, Radaelli AG, Frangi AF, Putman CM. Qualitative comparison of intra aneurysmal flow structures determined from conventional, virtual angiograms. Conference Proceedings Paper, SPIE Medical Imaging 2007: Physiology, function and structure from medical images, Vol. 6511, San Diego, USA 17-22th February 2007
-
Fingberg J. Medical and Life Science IT environments based on Grid Services. International Conference on Computational Methods ICCM2007, Hiroshima, Japan, 4-6th of April 2007
-
-
Furlong LI, Dach H, Hofmann-Apitius M, Sanz F. Linking Biomedical Literature with SNPs. International Workshop on Collaborative Bioinformatics, Torremolinos, Málaga, Spain, 11-14th of June, 2007
-
Furlong LI. Development of an Entity Recognition Tool for Sequence Variants of Genes in Biomedical Literature. Ph.D. dissertation in Bioinformatics for Health, Universitat Pompeu Fabra, Barcelona, Spain, 2007
-
-
Hanser S, Boeker M, Kumpf K, Bijlenga P, Schulz S. Design of an Ontology on Cerebral Aneurysms: Representing the Conceptual Space of the @neurIST Project. MedInfo 2007: Proceedings of the 12th World Congress on Health (Medical) Informatics; Building Sustainable Health Systems, pp: 2305-2306, IOS Press, 2007
-
-
-
Klinger R, Friedrich CM, Mevissen HT, Fluck J, Hofmann-Apitius M, Furlong LI, Sanz F. Identifying Gene Specific Variations in Biomedical Text. Journal of Bioinformatics and Computational Biology, Special Issue on "Making Sense of Mutations requires Knowledge Management", Vol. 5, Issue 6, pp. 1277-96, December 2007
-
Kroon M, Holzapfel GA. A model for saccular cerebral aneurysm growth by collagen fibre remodelling. Journal of Theoretical Biology, Volume 247, Issue 4, pp. 775-787, 21 August 2007
-
-
Lonsdale G. Collaborative Grid Service Platforms. Workshop on Global Business Services Delivery Platforms, IEEE CEC/EEE-2007, Tokyo, Japan, July 23-26th 2007
-
Millán D, Dempere L, Pozo JM, Cebral JR, Frangi AF. Morphological Characterization of Intracranial Aneurysms by Using 3-D Moment Invariants. IEEE Transactions on Medical Imaging, Vol. 26, nº 9, pp.1270-82, September 2007
-
-
Oubel E, de Craene M, Putman CM, Cebral JR, Frangi AF Analysis of intracranial aneurysm wall motion and its effects on hemodynamic patterns. Conference Proceedings Paper, SPIE Medical Imaging 2007: Physiology, Function, and Structure from Medical Images, Vol. 6511, San Diego, USA, 29th of March 2007
-
Patel U, Hose DR, Frangi AF, Lawford P, Coley S. The Development of a Computational Model to Determine the Risk of Aneurysm Rupture. 13th European Congress of Neurosurgery EANS, Glasgow, United Kingdom, 2-7th September 2007
-
Raberger NB, Ventikos Y, Watton PN. Computational Modelling of Cerebral Aneurysm Formation and Evolution. ANSYS User Conference, Chester, UK, 2nd-4th October 2007
-
Radaelli AG, Sola T, Vivas E, Mellado X, Castro MA, Putman CM, Leopoldo G, Cebral JR, Frangi AF. Combined clinical and computational information in complex cerebral aneurysms: application to mirror cerebral aneurysms. Conference Proceedings Paper, SPIE Medical Imaging 2007: Physiology, Function, and Structure from Medical Images, Vol. 6511, San Diego, USA, 29th of March 2007
-
-
Wang D, Lammers P, Bernsdorf J. Lattice Boltzmann simulations of steady shear thinnining blood flow with a Carreau-Yasuda model. PARCFD 2007 International Conference on Parallel Computational Fluid Dynamics, Antalya, Turkey, May 21-24th 2007
-
-
Watton PN, Ventikos Y. Modelling of Cerebral Aneurysm Formation and Evolution. 6th Aneurysm Advanced Treatment Symposium, Said Business School, University of Oxford, UK, , 13th-14th Dec 2007
2006
-
Arbona A, Benkner S, Fingberg J, Engelbrecht G, Hofmann-Apitius M, Kumpf K, Lonsdale G, Woehrer A. A Service oriented Grid Infrastructure for Biomedical Data and Compute Services. Proceedings of the International Workshop on Network Tools and Applications in Biology, Santa Margherita di Pula, Italy, July 2006
-
Arbona A, Benkner S, Fingberg J, Frangi AF, Hofmann-Apitius M, Hose DR, Lonsdale G, Ruefenacht DA, Viceconti M. Outlook for grid service technologies within the @neurIST eHealth environment. Studies in health technology and informatics (Stud Health Technol Inform), Vol.120, pp. 401-4, 2006
-
Arbona A, Benkner S, Fingberg J, Frangi AF, Hofmann-Apitius M, Hose DR, Lonsdale, Ruefenacht DA, Viceconti M. Outlook for Grid service technologies within the @neurIST eHealth environment. Proceedings of Healthgrid 2006, Amsterdam: IOS Press, 2006
-
Berti G. Computational Biomechanics Targets in the EU projects @neurIST and COAST. RIKEN Workshop on Computational Biomechanics, RIKEN Institute.
-
Bowker TJ, Summers P, Byrne JV, Ventikos Y. Thrombosis in coiled cerebral aneurysms: A computational model. World Congress of Biomechanics, Munich, Germany, July 29th - August 4th 2006
-
Dempere L, Oubel E, Castro MA, Putman CM, Frangi AF, Cebral JR. CFD Analysis Incorporating the Influence of Wall Motion: Application to Intracranial Aneurysms. Lecture Notes in Computer Science 4191, pp. 438-445, Medical Image Computing and Computer-Assisted Intervention (MICCAI), Copenhagen, Denmark, October 1st-6th, 2006
-
Dempere L, Oubel E, Frangi AF, Putman CM, Castro MA, Cebral JR. Wall motion and hemodynamics of intracranial aneurysms. Proceedings on 5TH World Congress of Biomechanics Munich, Germany, Jul. 29th – Aug. 4th 2006
-
Fingberg J, Hansen M, Hansen M, Krasemann H, Lo Iacono L, Probst T, Wright J. Integrating Data Custodians in eHealth Grids - A Digest of Security and Privacy Aspects. GI Jahrestagung, Lecture Notes in Informatics, Vol. P-93, pp. 695-701, Dresden, Germany, October 2006
-
Frangi AF, Hose DR, Cebral JR, Ruefenacht DA. Towards the integration of heterogeneous data: computational fluid dynamics as part of a processing chain in the context of risk assessment for cerebral aneurysms. World Congress of Biomechanics, Munich, Germany, July 29th - August 4th 2006
-
Frangi AF, Putman CM, Cebral JR. Computational framework for the study of cerebral Aneurysms and their endovascular treatment. World Congress of Biomechanics, Munich, Germany, July 29th - August 4th 2006
-
Frangi AF. @neurIST: Overview and project glimpses. ICT for Bio-Medical Sciences, Concertation Meeting, Brussels, Belgium, 29th & 30th of June 2006
-
Friedrich CM, Zimmermann M, Hofmann-Apitius M. Grid Computing - An opportunity for Biomedical and Statistical Computing. Talk at the Statistical Computing 2006 Conference, pp. 5, Schloss Reisenburg, Germany, 2006
-
Furlong LI, Dach H, Hofmann-Apitius M, Sanz F. Towards a development of a text-mining system for genes, sequence variants, phenotypes: integration of OSIRIS with ProMiner. 7th Spanish Symposium on Bioinformatics and Computational Biology, Zaragoza, Spain, 20-22nd of November 2006
-
Han B, Friedrich CM, Manthey R, Hofmann-Apitius M. Bayesian Network Modeling for the Prediction of Treatment Outcomes of Intracranial Aneurysms. Papers and Poster Abstracts of the German Conference on Bioinformatics (GCB), p. 122, 2006
-
Hose DR. Towards the Virtual Physiological Human. Computer Simulations in Medical Engineering, Institute of Mechanical Engineers, 2006
-
Kakalis NMP, Bowker T, Mitsos A, Summers P, Byrne JV, VentikosY. Modelling of endovascular coil embolisation of cerebral aneurysms. 2006-AIChE Annual Meeting, San Francisco, USA, November 2006
-
Kakalis NMP, Soroka MTD, Mitsos A, Summers P, Byrne JV, Ventikos Y. Haemodynamic effects of micro-catheterisation for the coiling of cerebral aneurysms. World Congress of Biomechanics, Munich, Germany, July 29th - August 4th 2006
-
Mitsos AP, Kakalis NMP, Ventikos Y, Byrne JV. Computational haemodynamic modelling of coiling an anatomically accurate cerebral aneurysm. European Society of Neuroradiology ESNR 06, Geneva, Switzerland, September 2006
-
Mitsos AP, Kakalis NMP, Ventikos Y, Fiehler J, Byrne JV. Computational fluid dynamics (CFD) study simulating the coiling of an anatomically accurate cerebral aneurysm. British Society of Neuroradiology BSNR 06, Kingston u/Hull, United Kingdom, 13th-14th October 2006
-
Ruefenacht DA, Stergiopulos N, Chopard B, Frangi AF, Hose DR, Cebral JR, Lylyk P. Flow related aspects of cerebral aneurysms. World Congress of Biomechanics, Munich, Germany, July 29th - August 4th 2006
-
Schmidt JG. Mechanobiological aspects in the @neurIST integrative framework for cerebral aneurysm management. Workshop on Multidisciplinary Simulation in Bio-Medical Applications, Mosbach, Germany, 21st-22nd of November 2006
-
Ventikos Y. Computational Modeling Techniques for the Prediction of Growth, Clotting, Embolisation Outcome of Cerebral Aneurysms. European Society of Neuroradiology ESNR 06, Geneva, Switzerland, September 2006
-
Ventikos Y. Multiphysics, multiscale modelling forr blood-tissue interactions in bioengineering. GDR Fluid-Structure interaction Meeting, Toulouse, France, May 2006
-
Ventikos Y. Multiphysics, multiscale simulations for pre-treatment planning. 5th Advanced Aneurysm Treatment Symposium, Oxford, United Kingdom, December 2006
|
|